Uncovering Protein-Protein Interactions in the Bibliome

Contents

This page contains materials related to our contributions to the Second BioCreative Challenge Evaluation Workshop

Decision structure on the protein-protein interaction article test data of Biocreative II, as produced by our Variable Trigonometric Threshold model. Higher Quality versions available in mpeg and Real Video, as described in [Abi-Haidar et al,2007].

• Citation 1: A. Abi-Haidar, J. Kaur, A. Maguitman, P. Radivojac, A. Retchsteiner, K. Verspoor, Z. Wang, and L.M. Rocha [2008]. Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks". Genome Biology. In Press.
• Citation 2: A. Abi-Haidar, J. Kaur, A. Maguitman, P. Radivojac, A. Retchsteiner, K. Verspoor, Z. Wang, and L.M. Rocha [2007]."Uncovering Protein-Protein Interactions in the Bibliome". Proceedings of the Second BioCreative Challenge Evaluation Workshop (ISBN 84-933255-6-2), pp. 247-255.

• The workshop paper alone

• The Supplemental materials

• The Presentation in Madrid